Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015823820.1_cds_XP_016501641.1_15354
CDS Infomation

[gene=LOC107819956] [db_xref=GeneID:107819956] [protein=aspartic proteinase-like protein 1 isoform X1] [protein_id=XP_016501641.1] [location=join(17164..17459,19069..19207,20261..20502,20805..21032,21132..21270,21405..21469,21545..21644,22468..22528,22630..22701,23425..23654)] [gbkey=CDS]
Sequence

ATGGAGATTCGTTTCACCGCTTTTGTACTGACGGCGGCGTTGATGCTCTCCGTTGAGCTC
TCCGCCGGCGGAACCTTCTCGTCGAGGTTGATTCACGGCTACTCCGACGAAGCGATGTCG
TTTTGGGCATCTAAAGGGAAGAGCGTGACGTGTCCGAAGCGCGAAAGTGTGGAGCGCATG
AGGTTGCTTCTTAGCAATGATTTGAAGCGCCAGAGATTAAAGCTTGGCTCGCAGAAACAA
CTCTTGTTTCCTTCTGAAGGAAGCAAAACTCATTTCTACGGCAACGACTTGAGTTGGCTG
CATTATGCGTGGATTGATATAGGGACGCCAAATGCATCATTTCTTGTCGCTTTGGATGCT
GGAAGCGATCTGCTCTGGGTCCCTTGTGATTGTGTACAATGTGCTCCGTTGTCTTCAAGC
TACTACTCAATGTTGGATAAAGATCTGAACGAGTATAGCCCAGCACGATCAAACACTAGC
AAGCATCTATCTTGCAGCCATCGATTATGTGAACTGGGTCCTAACTGCCAGAGTCCAAAG
GAACGATGCCCTTACACTGTTAACTATTATTCTGAAAATACATCAAGTTCGGGTTTTCTT
TTTGAGGACAAATTGCATTTGACTTCAGTTGGTGGTCATGAACATCAAGGTTCTGTGCTA
GCTTCTATCGTTATTGGGTGTGGTAGCAAACAAAGTGGCAGTTATTTGAATGGAGCTGCT
CCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAG
TCTGGATTTCTTCCACATTCATTCTCATTGTGTTTTGACAAGACTAATTCTGGCACAATT
TTCTTTGGTGATCAAGGGCCTGAAAATCAAAGACTAAGTTCATTTGTATCTTTGGATGGG
AATTACAATACCTATATTGTTGAAGTCCAACGTTATTGTTTTGGGGGTACCTGTCTAAAG
CAAAGCGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTATCTCCCTTCCGAA
ATCTTTCCAAAAGTAGTAACTGAGTTTGAAGAGCAAATAAATGCTACAAGGTTAGCTACA
GAAGATTTTCCTTACTGCTATAAGGCTAGTTCACGAGGTTTACCAAACATTCCTAGCATG
AAACTTGTGTTAGCTGCTAACCAGAGCTTTGTAATTCAGAACCCCGTGTTTACCATCTCC
AGTGATCAGGGCGATAACTTTTATTGTGTAGGTATCCTACCTATTGAGGGAATGATTGGT
ATCATTGGACAAAACCTTATGGAGGGATATCGAATGGTGTTTGATTGGGAAAACATGAAG
TTGGGTTGGTCTCACACCAAGTGTCAAGACATAGGAGGGAGTGCAAAAGTACCACCAACA
CCTCCTCCGAGTGGTTTAGCCTCAAATCCATTGCCAACAAATGAGCAACAAAGAAGCCCT
GGTGGACATGCAGTTGCACCTGCCATTGCCGGCAAACCATCTGCAGCATCACTCCATGCT
GTTTCATACTGGCATTGCGCTATGAGTTCTCTTCTACTTTCATTCGTTGTGTGGTTACCT
TATCTGATATAA

Peptide Sequence

PEP ID

XP_016501641.1
PEP Infomation

PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Nicotiana tabacum]
Sequence

MEIRFTAFVLTAALMLSVELSAGGTFSSRLIHGYSDEAMSFWASKGKSVTCPKRESVERM
RLLLSNDLKRQRLKLGSQKQLLFPSEGSKTHFYGNDLSWLHYAWIDIGTPNASFLVALDA
GSDLLWVPCDCVQCAPLSSSYYSMLDKDLNEYSPARSNTSKHLSCSHRLCELGPNCQSPK
ERCPYTVNYYSENTSSSGFLFEDKLHLTSVGGHEHQGSVLASIVIGCGSKQSGSYLNGAA
PDGVMGLGPGEISVPSLLAKSGFLPHSFSLCFDKTNSGTIFFGDQGPENQRLSSFVSLDG
NYNTYIVEVQRYCFGGTCLKQSGFQALVDSGSSFTYLPSEIFPKVVTEFEEQINATRLAT
EDFPYCYKASSRGLPNIPSMKLVLAANQSFVIQNPVFTISSDQGDNFYCVGILPIEGMIG
IIGQNLMEGYRMVFDWENMKLGWSHTKCQDIGGSAKVPPTPPPSGLASNPLPTNEQQRSP
GGHAVAPAIAGKPSAASLHAVSYWHCAMSSLLLSFVVWLPYLI

Transcript Sequence

Gene sequence data has not been registered.